Introduction | Minimal example | Introduction to the rTRM package | Database | Interactome data | Using PSICQUIC package to obtain protein-protein interactions | Case study: TRM associated with Sox2 in embryonic stem cells (ESCs) | A complete workflow in R | Ploting parameters | Citation | Session Information | References

1 Introduction | 2 Use case 1: Finding enrichment motifs in a single sequence | 3 Use case 2: Examining the binding sites | 4 Use case 3: Finding enriched motifs in multiple sequences | 5 Using PWMEnrich on human sequences | 6 Speeding up execution | 7 Customisation | 8 Session information